Publications

Selected publications

Radivojević, T. et al.

Nature Communications 11, 4879 (2020) 

"A machine learning Automated Recommendation Tool for synthetic biology" 


Lawson, Christopher E., et al.

Metabolic Engineering  63: 34-60  (2021)

"Machine learning for metabolic engineering: A review." 

Zargar, A., et al.

Journal of the American Chemical Society (JACS)  142.22: 9896 (2020)

 "Chemoinformatic-Guided Engineering of Polyketide Synthases." 

2024

ACS Synthetic Biology 13.2 (2024): 408-410

       Metabolic Engineering, 82, 157-170 

Protocols.io 

2023

PLoS Computational Biology 19.11 (2023): e1011111.

ACS Synthetic Biology 2023, 12, 6, 1632–1644

Nature Machine Intelligence, 5(3), 208-219.

Nature Machine Intelligence, 5(3), 196-207.

Current Opinion in Biotechnology, 79, 102881.

Nucleic Acids Research, 51(D1), D532-D538.

2022

 Journal of Chemical Information and Modeling

Communications of the ACM, 65(5), 88-97

Microsystems & Nanoengineering, 8(1): 1-10

Phytobiomes Journal: PBIOMES-05

2021

Nature Reviews Microbiology, 19.11: 701-715.

 Frontiers in Bioengineering and Biotechnology, 9, 45.

Metabolic Engineering  63, 34-60 

2020

Nature Communications 11, 4879 (2020)

Nature Communications 11, 4880 (2020). 

Journal of the American Chemical Society (JACS) 142, 22, 9896–9901 (2020).                  

2019

ACS Synthetic Biology, 8(10), 2385-2396 (2019).

ACS Synthetic Biology 9.1: 53-62 (2019).

Nature Reviews Microbiology, pp.1-17 (2019).

Journal of Proteome Research, 18: 3752-3761 (2019).

ACS Synthetic Biology 1474-1477 (2019)

Metabolic Engineering (2019).

Journal of Industrial Microbiology & Biotechnology, pp.1-11 (2019).

ACS Synthetic Biology (2019).

PloS one 14.1: e0210558 (2019).

Microbial Metabolomics. Humana Press, New York, NY: 317-345 (2019).                         

2018

ACS Synthetic Biology 7(11): 2566-2576 (2018).

Nature pj Systems Biology & Applications 4.1: 19 (2018).

Biotechnology Advances 36(4):1308 (2018).

Micro Electro Mechanical Systems (MEMS): IEEE (pp. 1229-1232) (2018).

Nature Communications, 9(1): 965 (2018).

Metabolites, 8(1), p.3 (2018).

Synthetic Metabolic Pathways. Humana Press, NY: 333-352 (2018).                          

2017

Nucleic acids research 46.D1 (2017): D509-D515.

ACS Synthetic Biology DOI: 10.1021/acssynbio.7b00204 (2017).

Metabolic Engineering 42: 115-125 (2017).

BMC bioinformatics 18 (1): 205 (2017).

Frontiers in Bioengineering and Biotechnology 5 (2017).

2016

Frontiers in Bioengineering and Biotechnology 4 (2016).

Biotechnology for Biofuels 9 (1): 212 (2016).

Cell Systems 2 (5): 335-346 (2016).                                                               

Nature pj Systems Biology & Applications 2: 16009 (2016).                             

2015

PLOS Computational Biology 11(9): e1004363 (2015).

Metabolic Engineering 28: 123-133 (2015).                           

2014

PLOS Computational Biology 10(9): e1003827 (2014).

ACS Synthetic Biology 3(7): 466-75 (2014).                     

2013

Journal of Bacteriology 195(14): 3173-82 (2013).                             

2010

In Geomicrobiology: molecular and environmental perspective, 11: 239-249 (2010).

Biotechnology Progress 26(1):52-6 (2010).                              

2009

Biotechnology Progress 25(5): 1254-1259 (2009).

Mass Spectrometry Reviews, 28(2): 362-375 (2009). 

Biotechnology Bioengineering, 102: 1161-1169 (2009).